spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit
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Nikos Alexandris
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Hi "spgrass6" experts!
I am trying to get spgrass6 to work under R 2.9.1 but it fails (to compile? -- code is below). Did anybody had this issue recently? Is it a bug? Thanks, Nikos --- install.packages("spgrass6", dependencies=TRUE) Warning in install.packages("spgrass6", dependencies = TRUE) : argument 'lib' is missing: using '/usr/local/lib/R/site-library' trying URL 'http://cran.rakanu.com/src/contrib/spgrass6_0.6-6.tar.gz' Content type 'application/x-gzip' length 332298 bytes (324 Kb) opened URL ================================================== downloaded 324 Kb * Installing *source* package ‘spgrass6’ ... ** R ** inst ** preparing package for lazy loading Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11 Path to GDAL shared files: /usr/local/share/gdal Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007 Path to PROJ.4 shared files: (autodetected) ** help *** installing help indices >>> Building/Updating help pages for package 'spgrass6' Formats: text html latex example execGRASS text html latex example gmeta6 text html latex example initGRASS text html latex example readRAST6 text html latex example readVECT6 text html latex example spgrass6 text html latex example ** building package indices ... * DONE (spgrass6) *** glibc detected *** /usr/lib64/R/bin/exec/R: double free or corruption (fasttop): 0x0000000003112780 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f6a3cbe7cb8] /lib/libc.so.6(cfree+0x76)[0x7f6a3cbea276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f6a38afe50d] /lib/libc.so.6(exit+0x9d)[0x7f6a3cba66ed] /usr/lib64/R/lib/libR.so[0x7f6a3d0bfae8] /usr/lib64/R/lib/libR.so(run_Rmainloop+0x55)[0x7f6a3cfedfa5] /usr/lib64/R/bin/exec/R(main+0x1b)[0x40098b] /lib/libc.so.6(__libc_start_main+0xe6)[0x7f6a3cb8e5a6] /usr/lib64/R/bin/exec/R[0x400879] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 08:03 145540 /usr/lib/R/bin/exec/R 00600000-00601000 r--p 00000000 08:03 145540 /usr/lib/R/bin/exec/R 00601000-00602000 rw-p 00001000 08:03 145540 /usr/lib/R/bin/exec/R 01bbd000-03de5000 rw-p 01bbd000 00:00 0 [heap] 7f6a2c000000-7f6a2c021000 rw-p 7f6a2c000000 00:00 0 7f6a2c021000-7f6a30000000 ---p 7f6a2c021000 00:00 0 7f6a31f15000-7f6a32068000 r-xp 00000000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32068000-7f6a32267000 ---p 00153000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32267000-7f6a3226f000 r--p 00152000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a3226f000-7f6a32271000 rw-p 0015a000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32271000-7f6a32272000 rw-p 7f6a32271000 00:00 0 7f6a32272000-7f6a3228d000 r-xp 00000000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3228d000-7f6a3248d000 ---p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248d000-7f6a3248e000 r--p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248e000-7f6a3248f000 rw-p 0001c000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248f000-7f6a3249a000 r-xp 00000000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3249a000-7f6a3269a000 ---p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269a000-7f6a3269b000 r--p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269b000-7f6a3269c000 rw-p 0000c000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269c000-7f6a32752000 r-xp 00000000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32752000-7f6a32951000 ---p 000b6000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32951000-7f6a32957000 r--p 000b5000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32957000-7f6a32958000 rw-p 000bb000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32958000-7f6a32959000 r-xp 00000000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32959000-7f6a32b59000 ---p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b59000-7f6a32b5a000 r--p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b5a000-7f6a32b5b000 rw-p 00002000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b5b000-7f6a32b61000 r-xp 00000000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32b61000-7f6a32d60000 ---p 00006000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d60000-7f6a32d61000 r--p 00005000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d61000-7f6a32d62000 rw-p 00006000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d62000-7f6a32d79000 r-xp 00000000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32d79000-7f6a32f78000 ---p 00017000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f78000-7f6a32f79000 r--p 00016000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f79000-7f6a32f7a000 rw-p 00017000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f7a000-7f6a32f9a000 r-xp 00000000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a32f9a000-7f6a33199000 ---p 00020000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a33199000-7f6a3319a000 r--p 0001f000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a3319a000-7f6a3319b000 rw-p 00020000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a3319b000-7f6a331a6000 r-xp 00000000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a331a6000-7f6a333a5000 ---p 0000b000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a5000-7f6a333a6000 r--p 0000a000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a6000-7f6a333a7000 rw-p 0000b000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a7000-7f6a333ba000 r-xp 00000000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a333ba000-7f6a335b9000 ---p 00013000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335b9000-7f6a335ba000 r--p 00012000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335ba000-7f6a335bb000 rw-p 00013000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335bb000-7f6a33604000 r-xp 00000000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33604000-7f6a33803000 ---p 00049000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33803000-7f6a33804000 r--p 00048000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33804000-7f6a33806000 rw-p 00049000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33806000-7f6a33807000 rw-p 7f6a33806000 00:00 0 7f6a33807000-7f6a33810000 r-xp 00000000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33810000-7f6a33a10000 ---p 00009000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a10000-7f6a33a11000 r--p 00009000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a11000-7f6a33a12000 rw-p 0000a000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a12000-7f6a33a1b000 r-xp 00000000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33a1b000-7f6a33c1a000 ---p 00009000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1a000-7f6a33c1b000 r--p 00008000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1b000-7f6a33c1c000 rw-p 00009000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1c000-7f6a33c82000 r-xp 00000000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33c82000-7f6a33e82000 ---p 00066000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e82000-7f6a33e83000 r--p 00066000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e83000-7f6a33e85000 rw-p 00067000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e85000-7f6a33e8b000 rw-p 7f6a33e85000 00:00 0 7f6a33e8b000-7f6a33e93000 r-xp 00000000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a33e93000-7f6a34092000 ---p 00008000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34092000-7f6a34093000 r--p 00007000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34093000-7f6a34094000 rw-p 00008000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34094000-7f6a34099000 r-xp 00000000 08:03 269574 Aborted The downloaded packages are in ‘/tmp/RtmpMaCWFV/downloaded_packages’ Warning message: In install.packages("spgrass6", dependencies = TRUE) : installation of package 'spgrass6' had non-zero exit status _______________________________________________ grass-stats mailing list [hidden email] http://lists.osgeo.org/mailman/listinfo/grass-stats |
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Nikos Alexandris
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Nikos Alexandris wrote: > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > compile? -- code is below). OK, here is some (hopefully useful) info: --%<--- root@vertical:/geo/osgeo/src/spgrass6# R -d gdb GNU gdb 6.8-debian Copyright (C) 2008 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-linux-gnu"... (gdb) run Starting program: /usr/lib/R/bin/exec/R R version 2.9.1 (2009-06-26) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages ( "spgrass6" , dependencies = TRUE ) Warning in install.packages("spgrass6", dependencies = TRUE) : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- [Thread debugging using libthread_db enabled] Error while reading shared library symbols: Cannot find new threads: generic error Cannot find new threads: generic error --%<--- Nikos _______________________________________________ grass-stats mailing list [hidden email] http://lists.osgeo.org/mailman/listinfo/grass-stats |
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Nikos Alexandris
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Nikos Alexandris wrote:
> > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > compile? -- code is below). And for those who "know" here is the full backtrace :-P --%<-----%<-----%<-----%<-----%<-----%<-----%<--- (gdb) bt full #0 dl_open_worker (a=<value optimized out>) at dl-open.c:369 args = (struct dl_open_args *) 0x7fff9bb05990 file = 0x2d <Address 0x2d out of bounds> mode = -2147483646 new = (struct link_map *) 0x9fc660 lazy = 0 i = 45 any_tls = <value optimized out> call_map = (struct link_map *) 0x7fbc93b0d740 r = <value optimized out> l = <value optimized out> __PRETTY_FUNCTION__ = "dl_open_worker" #1 0x00007fbc938fe8c6 in _dl_catch_error (objname=0x7fff9bb059e0, errstring=0x7fff9bb059d8, mallocedp=0x7fff9bb059ef, operate=0x7fbc93903370 <dl_open_worker>, args=0x7fff9bb05990) at dl-error.c:178 errcode = <value optimized out> old = (struct catch * volatile) 0x7fff9bb05a90 c = {objname = 0x7fff9bb05958 "�,F\223�\177", errstring = 0x0, malloced = 192, env = {{__jmpbuf = {-2, 817847137620482921, 2147483650, 140735805414464, 140447900891435, 1, 817847137555471209, 855547435465202537}, __mask_was_saved = -1824921504, __saved_mask = {__val = {140735805413696, 9913992, 11612232, 15010776, 11612232, 11637960, 140447906201008, 140447901431166, 140735805414112, 11637960, 11612232, 140447901771968, 15010776, 1, 1, 140447901428938}}}}} catchp = (struct catch ** const) 0x7fbc93b10b38 #2 0x00007fbc93902dbb in _dl_open (file=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode=-2147483646, caller_dlopen=0x7fbc933df92b, nsid=-2, argc=1, argv=0x7fff9bb100f8, env=0x96fd60) at dl-open.c:596 args = {file = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode = -2147483646, caller_dlopen = 0x7fbc933df92b, caller_dl_open = 0x7fbc91da9f5b, map = 0x9fc660, nsid = 0, argc = 1, argv = 0x7fff9bb100f8, env = 0x96fd60} objname = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so" errstring = <value optimized out> malloced = <value optimized out> errcode = <value optimized out> __PRETTY_FUNCTION__ = "_dl_open" #3 0x00007fbc91da9f5b in dlopen_doit (a=<value optimized out>) at dlopen.c:67 args = (struct dlopen_args *) 0x7fff9bb05bb0 #4 0x00007fbc938fe8c6 in _dl_catch_error (objname=0x7fbc91fac0d0, errstring=0x7fbc91fac0d8, mallocedp=0x7fbc91fac0c8, operate=0x7fbc91da9ef0 <dlopen_doit>, args=0x7fff9bb05bb0) at dl-error.c:178 errcode = <value optimized out> old = (struct catch * volatile) 0x0 c = {objname = 0x19bb05ac0 <Address 0x19bb05ac0 out of bounds>, errstring = 0x0, malloced = false, env = {{__jmpbuf = { 140447879708864, 817847137601608553, 140447877603056, 1, 25027232, 140447906201008, 817847137628871529, 855547435465202537}, __mask_was_saved = -1823128519, __saved_mask = {__val = {140733193388032, 140447903265992, 140735805414464, 1, 1, 25027232, 140447906201008, 140447898080891, 206158430256, 140735805414464, 140735805414224, 11637960, 140447906200032, 140447901125965, 140735805414368, 140447902416690}}}}} catchp = (struct catch ** const) 0x7fbc93b10b38 #5 0x00007fbc91daa2cc in _dlerror_run (operate=0x7fbc91da9ef0 <dlopen_doit>, args=0x7fff9bb05bb0) at dlerror.c:164 result = (struct dl_action_result *) 0x7fbc91fac0c0 #6 0x00007fbc91da9ec1 in __dlopen (file=<value optimized out>, mode=<value optimized out>) at dlopen.c:88 args = {file = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode = 2, new = 0x1, caller = 0x7fbc933df92b} #7 0x00007fbc933df92b in AddDLL (path=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", asLocal=1, now=1, DLLsearchpath=0x7fbc935e92bd "") at Rdynload.c:532 handle = <value optimized out> info = <value optimized out> #8 0x00007fbc933dfae7 in R_moduleCdynload (module=0x7fbc936234c8 "R_X11", local=1, now=1) at Rdynload.c:925 dllpath = "/usr/lib64/R/modules//R_X11.so\000@\000\000\000\000\000\000 \000\000@^�\233�\177\000\000�&_\223�\177\000\000�U\231\000\000\000\000 \000\200\f�\000\000\000\000\000\000\000\000\000\001\000\000\000\202\000 \000\000\000\000\000\000X/�\000\000\000\000\000X/�\000\000\000\000 \000�/�\000\000\000\000\000\0300�\000\000\000\000\000|�S\223�\177\000 \000\230\r�\000\000\000\000\000\002\000\000\000\000\000\000\000\230Q\231 \000\000\000\000\000`\r�\000\000\000\000\000\210F\227\000\000\000\000 \000\210F\227\000\000\000\000\000\210F\227\000\000\000\000\000\210F\227 \000\000\000\000\000\210F\227\000\000\000\000\000"... p = <value optimized out> res = <value optimized out> #9 0x00007fbc9358636a in R_access_X11 () at X11.c:55 No locals. #10 0x00007fbc934e41f5 in do_capabilitiesX11 (call=<value optimized out>, op=<value optimized out>, args=0x7fff9bb05990, rho=<value optimized out>) at platform.c:1709 No locals. #11 0x00007fbc934c5e99 in do_internal (call=<value optimized out>, op=<value optimized out>, args=0x974688, env=0xfd7380) at names.c:1149 s = (SEXP) 0x17de2a0 fun = (SEXP) 0x9aae58 ans = <value optimized out> save = 116 flag = 0 vmax = (void *) 0x0 #12 0x00007fbc93486f24 in Rf_eval (e=0x17dd3a8, rho=0xfd7380) at eval.c:461 save = 115 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 54 evalcount = 152 #13 0x00007fbc934872bf in forcePromise (e=0xe4a4f8) at eval.c:332 prstack = {promise = 0xe4a4f8, next = 0x7fff9bb072c0} val = <value optimized out> #14 0x00007fbc93486d1d in Rf_eval (e=0xe4a4f8, rho=0xe4a338) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 53 evalcount = 152 #15 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0xe4a338) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0xe4a4f8 depthsave = 52 evalcount = 152 #16 0x00007fbc934872bf in forcePromise (e=0xf97060) at eval.c:332 prstack = {promise = 0xf97060, next = 0x7fff9bb076b0} val = <value optimized out> #17 0x00007fbc93486d1d in Rf_eval (e=0xf97060, rho=0xf96dc0) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 51 evalcount = 152 #18 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0xf96dc0) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0xf97060 depthsave = 50 evalcount = 152 #19 0x00007fbc934872bf in forcePromise (e=0xf96b58) at eval.c:332 prstack = {promise = 0xf96b58, next = 0x7fff9bb07d10} val = <value optimized out> #20 0x00007fbc93486d1d in Rf_eval (e=0xf96b58, rho=0x10e54c0) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 49 evalcount = 152 #21 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0x10e54c0) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0xf96b58 depthsave = 48 evalcount = 152 #22 0x00007fbc93487e55 in Rf_evalListKeepMissing (el=0xa9d918, rho=0x10e54c0) at eval.c:1607 h = (SEXP) 0x10e54c0 tail = (SEXP) 0x11ba098 #23 0x00007fbc93487ff3 in do_return (call=0xa9c9e8, op=<value optimized out>, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:1208 a = <value optimized out> v = <value optimized out> vals = <value optimized out> nv = <value optimized out> #24 0x00007fbc93486f24 in Rf_eval (e=0xa9c9e8, rho=0x10e54c0) at eval.c:461 save = 109 flag = 0 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 47 evalcount = 152 #25 0x00007fbc934872bf in forcePromise (e=0x10e53e0) at eval.c:332 prstack = {promise = 0x10e53e0, next = 0x7fff9bb0cf00} val = <value optimized out> #26 0x00007fbc93486d1d in Rf_eval (e=0x10e53e0, rho=0x10e5140) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 46 evalcount = 152 #27 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0x10e5140) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0x10e53e0 depthsave = 45 evalcount = 152 #28 0x00007fbc934893fc in do_begin (call=0xa9ce80, op=0x993420, args=0xa9cba8, rho=0x10e5140) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #29 0x00007fbc93486f24 in Rf_eval (e=0xa9ce80, rho=0x10e5140) at eval.c:461 save = 106 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 44 evalcount = 152 #30 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9ca58, op=0x10e5488, arglist=0x10e53a8, rho=0x10e54c0, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa9ce80 formals = (SEXP) 0x10e5178 actuals = (SEXP) 0x10e5178 savedrho = <value optimized out> newrho = (volatile SEXP) 0x10e5140 f = (SEXP) 0x10e5178 a = (SEXP) 0x10e5178 tmp = (SEXP) 0x7fff9bb08340 cntxt = {nextcontext = 0x7fff9bb08b10, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805424448, -817782803990029463, 17715576, 140447906200080, 17716136, 10184792, 817847134627847017, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447902528555, 131840, 184693507720, 14992280, 11137112, 9913992, 9913992, 21452480, 140447901582106, 0, 10048984, 11162312, 14992224, 11137056, 11143960, 10373112}}}}, cstacktop = 105, evaldepth = 44, promargs = 0x10e53a8, callfun = 0x10e5488, sysparent = 0x10e54c0, call = 0xa9ca58, cloenv = 0x10e5140, conexit = 0x974688, cend = 0, cenddata = 0x17ab490, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #31 0x00007fbc93486e73 in Rf_eval (e=0xa9ca58, rho=0x10e54c0) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0x10e53a8 depthsave = 43 evalcount = 152 #32 0x00007fbc93489370 in do_set (call=0xa9cb00, op=0x993618, args=0xa9cac8, rho=0x10e54c0) at eval.c:1446 s = <value optimized out> #33 0x00007fbc93486f24 in Rf_eval (e=0xa9cb00, rho=0x10e54c0) at eval.c:461 save = 100 flag = 1 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 42 evalcount = 152 #34 0x00007fbc934893fc in do_begin (call=0xa9d120, op=0x993420, args=0xa9cb38, rho=0x10e54c0) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #35 0x00007fbc93486f24 in Rf_eval (e=0xa9d120, rho=0x10e54c0) at eval.c:461 save = 98 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 41 evalcount = 152 #36 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9c6c0, op=0xe4a290, arglist=0xf96b20, rho=0xf96dc0, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa9d120 formals = (SEXP) 0x10e54f8 actuals = (SEXP) 0x10e54f8 savedrho = <value optimized out> newrho = (volatile SEXP) 0x10e54c0 f = (SEXP) 0x10e54f8 a = (SEXP) 0x10e54f8 tmp = (SEXP) 0x7fff9bb08b10 cntxt = {nextcontext = 0x7fff9bb09490, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805426448, -817782803805480087, 17716472, 140447906200080, 16345888, 10184792, 817847134961294185, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140735805426640, 11146392, 11146392, 18755608, 18755608, 11146392, 11125152, 16346560, 0, 11125152, 140447906200080, 140447906200032, 140447901504469, 11125152, 9913992, 140447906200440}}}}, cstacktop = 97, evaldepth = 41, promargs = 0xf96b20, callfun = 0xe4a290, sysparent = 0xf96dc0, call = 0xa9c6c0, cloenv = 0x10e54c0, conexit = 0x974688, cend = 0, cenddata = 0x9954e0, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #37 0x00007fbc93486e73 in Rf_eval (e=0xa9c6c0, rho=0xf96dc0) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xf96b20 depthsave = 40 evalcount = 152 #38 0x00007fbc93486f24 in Rf_eval (e=0xa9c810, rho=0xf96dc0) at eval.c:461 save = 92 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 39 evalcount = 152 #39 0x00007fbc93486f24 in Rf_eval (e=0xa9c050, rho=0xf96dc0) at eval.c:461 save = 90 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 38 evalcount = 152 #40 0x00007fbc934893fc in do_begin (call=0xa998b8, op=0x993420, args=0xa9c088, rho=0xf96dc0) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #41 0x00007fbc93486f24 in Rf_eval (e=0xa998b8, rho=0xf96dc0) at eval.c:461 save = 88 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 37 evalcount = 152 #42 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9e358, op=0xe4a300, arglist=0xf97028, rho=0xe4a338, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa998b8 formals = (SEXP) 0xf96df8 actuals = (SEXP) 0xf96df8 savedrho = <value optimized out> newrho = (volatile SEXP) 0xf96dc0 f = (SEXP) 0xf96df8 a = (SEXP) 0xf96df8 tmp = (SEXP) 0x7fff9bb09490 cntxt = {nextcontext = 0x7fff9bb09a50, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805428880, -817784652017149079, 16346616, 140447906200080, 16347176, 10184792, 817847135280061289, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {9913992, 140735805429008, 11146440, 4304881288, 11146444, 34359738371, 140447902558688, 140447902558816, 28636376, 0, 11151664, 4, 0, 18018280, 1, 10059352}}}}, cstacktop = 87, evaldepth = 37, promargs = 0xf97028, callfun = 0xe4a300, sysparent = 0xe4a338, call = 0xa9e358, cloenv = 0xf96dc0, conexit = 0x974688, cend = 0, cenddata = 0xaa29d8, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #43 0x00007fbc93486e73 in Rf_eval (e=0xa9e358, rho=0xe4a338) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xf97028 depthsave = 36 evalcount = 152 #44 0x00007fbc934893fc in do_begin (call=0xa99ca8, op=0x993420, args=0xa9e390, rho=0xe4a338) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #45 0x00007fbc93486f24 in Rf_eval (e=0xa99ca8, rho=0xe4a338) at eval.c:461 save = 82 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 35 evalcount = 152 #46 0x00007fbc9348aaab in Rf_applyClosure (call=0x17dd418, op=0xa99df8, arglist=0xe4a4c0, rho=0xfd7380, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa99ca8 formals = (SEXP) 0xe4a3a8 actuals = (SEXP) 0xe4a3a8 savedrho = <value optimized out> newrho = (volatile SEXP) 0xe4a338 f = (SEXP) 0xe4a3a8 a = (SEXP) 0xe4a3a8 tmp = (SEXP) 0x7fff9bb09a50 cntxt = {nextcontext = 0x7fff9bb0a7f0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805430352, -817784817715225751, 14984104, 140447906200080, 14984384, 10184792, 817847135472999273, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447906200528, 1024, 140447901109400, 1, 1, 9913992, 9913992, 11145768, 10108392, 16610176, 25024800, 11145912, 140447906200032, 27212608, 25024856, 16610176}}}}, cstacktop = 81, evaldepth = 35, promargs = 0xe4a4c0, callfun = 0xa99df8, sysparent = 0xfd7380, call = 0x17dd418, cloenv = 0xe4a338, conexit = 0x974688, cend = 0, cenddata = 0xabca98, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #47 0x00007fbc93486e73 in Rf_eval (e=0x17dd418, rho=0xfd7380) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xe4a4c0 depthsave = 34 evalcount = 152 #48 0x00007fbc93488b38 in applydefine (call=0x17dd568, op=0x993618, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:1335 expr = (SEXP) 0x17dd4f8 lhs = <value optimized out> rhs = <value optimized out> tmp = <value optimized out> tmp2 = <value optimized out> tmploc = <value optimized out> buf = "PF\227\000\000\000\000\000xg\233\000\000\000\000\000�5\231\000 \000\000\000\000\000�\216\223�\177\000" cntxt = {nextcontext = 0x0, callflag = 11146200, cjmpbuf = {{__jmpbuf = {11146152, 11146104, 11146200, 140447902523318, 9913320, 10212064, 40, 10213952}, __mask_was_saved = -1819345968, __saved_mask = {__val = {140447906200752, 25025024, 720716388281809392, 11145720, 4306112968, 7, 146028888143, 27211936, 11258688, 16610176, 25024464, 27211656, 9913992, 0, 25021920, 0}}}}, cstacktop = 0, evaldepth = 0, promargs = 0x974688, callfun = 0x974688, sysparent = 0x7fff9bb0cf00, call = 0x9746d0, cloenv = 0x974688, conexit = 0x19f3788, cend = 0x19f3910, cenddata = 0x19f38a0, vmax = 0x974688, intsusp = 25024464, handlerstack = 0xfd7380, restartstack = 0xabcb40, prstack = 0x19f38a0, nodestack = 0x7fbc93486da7} #49 0x00007fbc93486f24 in Rf_eval (e=0x17dd568, rho=0xfd7380) at eval.c:461 save = 76 flag = 1 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 33 evalcount = 152 #50 0x00007fbc934893fc in do_begin (call=0x17dd5d8, op=0x993420, args=0x17dd5a0, rho=0xfd7380) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #51 0x00007fbc93486f24 in Rf_eval (e=0x17dd5d8, rho=0xfd7380) at eval.c:461 save = 74 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 32 evalcount = 152 #52 0x00007fbc93486f24 in Rf_eval (e=0x17dd8b0, rho=0xfd7380) at eval.c:461 save = 72 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 31 evalcount = 152 #53 0x00007fbc934893fc in do_begin (call=0x17da770, op=0x993420, args=0x17dd8e8, rho=0xfd7380) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #54 0x00007fbc93486f24 in Rf_eval (e=0x17da770, rho=0xfd7380) at eval.c:461 save = 70 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 30 evalcount = 152 #55 0x00007fbc9348aaab in Rf_applyClosure (call=0x1456a30, op=0x17da7e0, arglist=0xfd73f0, rho=0xab5b78, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0x17da770 formals = (SEXP) 0xfd73b8 actuals = (SEXP) 0xfd73b8 savedrho = <value optimized out> newrho = (volatile SEXP) 0xfd7380 f = (SEXP) 0xfd73b8 a = (SEXP) 0xfd73b8 tmp = (SEXP) 0x7fff9bb0a7f0 cntxt = {nextcontext = 0x7fff9bb0ba00, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805433840, -817784617464472727, 16610232, 140447906200080, 16610288, 10184792, 817847133715585897, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447905541856, 140447906200440, 124554051585, 60, 0, 140733193388033, 140447900624992, 1026, 140735805434084, 140735805434080, 140445430579200, 10104536, 9913992, 11673880, 11673992, 9913992}}}}, cstacktop = 69, evaldepth = 30, promargs = 0xfd73f0, callfun = 0x17da7e0, sysparent = 0xab5b78, call = 0x1456a30, cloenv = 0xfd7380, conexit = 0x974688, cend = 0, cenddata = 0xe6af78, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #56 0x00007fbc93486e73 in Rf_eval (e=0x1456a30, rho=0xab5b78) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xfd73f0 depthsave = 29 evalcount = 152 #57 0x00007fbc934aeb55 in do_logic2 (call=0xe6b058, op=0x994ef8, args=<value optimized out>, env=0xab5b78) at logic.c:232 s1 = <value optimized out> s2 = (SEXP) 0x1456a30 x1 = 1 x2 = <value optimized out> ans = (SEXP) 0xaba6e8 #58 0x00007fbc93486f24 in Rf_eval (e=0xe6b058, rho=0xab5b78) at eval.c:461 save = 63 flag = 0 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 28 evalcount = 152 #59 0x00007fbc934ae8cd in do_logic2 (call=0xe6b0c8, op=0x994ef8, args=0xe6b090, env=0xab5b78) at logic.c:214 s1 = (SEXP) 0xe6b058 s2 = (SEXP) 0x1456988 x1 = <value optimized out> x2 = <value optimized out> ans = <value optimized out> #60 0x00007fbc93486f24 in Rf_eval (e=0xe6b0c8, rho=0xab5b78) at eval.c:461 save = 60 flag = 0 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 27 evalcount = 152 #61 0x00007fbc93489f24 in do_if (call=0xe6b138, op=<value optimized out>, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:960 Cond = <value optimized out> #62 0x00007fbc93486f24 in Rf_eval (e=0xe6b138, rho=0xab5b78) at eval.c:461 save = 58 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 26 evalcount = 152 #63 0x00007fbc93486f24 in Rf_eval (e=0xd65dd8, rho=0xab5b78) at eval.c:461 save = 56 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 25 evalcount = 152 #64 0x00007fbc934893fc in do_begin (call=0xd65e48, op=0x993420, args=0xd65e10, rho=0xab5b78) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #65 0x00007fbc93486f24 in Rf_eval (e=0xd65e48, rho=0xab5b78) at eval.c:461 save = 54 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 24 evalcount = 152 #66 0x00007fbc93486f24 in Rf_eval (e=0xd65ef0, rho=0xab5b78) at eval.c:461 save = 52 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 23 evalcount = 152 #67 0x00007fbc934893fc in do_begin (call=0xd66158, op=0x993420, args=0xd65f28, rho=0xab5b78) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #68 0x00007fbc93486f24 in Rf_eval (e=0xd66158, rho=0xab5b78) at eval.c:461 save = 50 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 22 evalcount = 152 #69 0x00007fbc9348aaab in Rf_applyClosure (call=0xa2f590, op=0xc70db0, arglist=0xab5d38, rho=0xa29060, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xd66158 formals = (SEXP) 0xab5bb0 actuals = (SEXP) 0xab5bb0 savedrho = <value optimized out> newrho = (volatile SEXP) 0xab5b78 f = (SEXP) 0xab5bb0 a = (SEXP) 0xab5bb0 tmp = (SEXP) 0x7fff9bb0ba00 cntxt = {nextcontext = 0x7fff9bb0c1d0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805438464, -817784220984255639, 11230128, 140447906200080, 11230520, 10184792, 817847134317468521, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447902417977, 140733193388032, 140445430579200, 42969831616, 786432, 6907017904, 3293522019091555860, 140735805439056, 140447906200032, 140447906200032, 12828792, 12828840, 1, 140447906200032, 140447901742436, 2}}}}, cstacktop = 49, evaldepth = 22, promargs = 0xab5d38, callfun = 0xc70db0, sysparent = 0xa29060, call = 0xa2f590, cloenv = 0xab5b78, conexit = 0x974688, cend = 0, cenddata = 0x974688, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #70 0x00007fbc93486e73 in Rf_eval (e=0xa2f590, rho=0xa29060) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xab5d38 depthsave = 21 evalcount = 152 #71 0x00007fbc93489370 in do_set (call=0xa30060, op=0x993618, args=0xa2f280, rho=0xa29060) at eval.c:1446 s = <value optimized out> #72 0x00007fbc93486f24 in Rf_eval (e=0xa30060, rho=0xa29060) at eval.c:461 save = 44 flag = 1 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 20 evalcount = 152 #73 0x00007fbc934893fc in do_begin (call=0xa318d0, op=0x993420, args=0xa2fe68, rho=0xa29060) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #74 0x00007fbc93486f24 in Rf_eval (e=0xa318d0, rho=0xa29060) at eval.c:461 save = 42 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 19 evalcount = 152 #75 0x00007fbc9348aaab in Rf_applyClosure (call=0xa71878, op=0xa34750, arglist=0x974688, rho=0xa5e7b8, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa318d0 formals = (SEXP) 0xa28e68 actuals = (SEXP) 0xa28e68 savedrho = <value optimized out> newrho = (volatile SEXP) 0xa29060 f = (SEXP) 0xa28e68 a = (SEXP) 0xa28e68 tmp = (SEXP) 0x7fff9bb0c1d0 cntxt = {nextcontext = 0x7fff9bb0cb80, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805440464, -817784283637720215, 10653288, 140447906200080, 9913992, 10184792, 817847132436323177, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {11061767098, 140735805440608, 140735805440608, 140735805441024, 81604378666, 10867280, 11258688, 10872760, 10959328, 10866360, 9913992, 0, 140447902417977, 0, 0, 42959586896}}}}, cstacktop = 41, evaldepth = 19, promargs = 0x974688, callfun = 0xa34750, sysparent = 0xa5e7b8, call = 0xa71878, cloenv = 0xa29060, conexit = 0x974688, cend = 0, cenddata = 0x9a62d0, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #76 0x00007fbc93486e73 in Rf_eval (e=0xa71878, rho=0xa5e7b8) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0x974688 depthsave = 18 evalcount = 152 #77 0x00007fbc934893fc in do_begin (call=0xa73568, op=0x993420, args=0xa72658, rho=0xa5e7b8) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #78 0x00007fbc93486f24 in Rf_eval (e=0xa73568, rho=0xa5e7b8) at eval.c:461 save = 36 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 17 evalcount = 152 #79 0x00007fbc93486f24 in Rf_eval (e=0xa74328, rho=0xa5e7b8) at eval.c:461 save = 34 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 16 evalcount = 152 #80 0x00007fbc934893fc in do_begin (call=0xa75078, op=0x993420, args=0xa74130, rho=0xa5e7b8) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #81 0x00007fbc93486f24 in Rf_eval (e=0xa75078, rho=0xa5e7b8) at eval.c:461 save = 32 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 15 evalcount = 152 #82 0x00007fbc9348aaab in Rf_applyClosure (call=0xcbd278, op=0xa78aa8, arglist=0xa5ee98, rho=0xbded98, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa75078 formals = (SEXP) 0xa5e5c0 actuals = (SEXP) 0xa5e5c0 savedrho = <value optimized out> newrho = (volatile SEXP) 0xa5e7b8 f = (SEXP) 0xa5e5c0 a = (SEXP) 0xa5e5c0 tmp = (SEXP) 0x7fff9bb0cb80 cntxt = {nextcontext = 0x7fff9bb0dfc0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805442944, -817784278624478359, 10872256, 140447906200080, 10874520, 10184792, 817847132757187433, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {17628959877169699689, 11301424, 140447906200080, 11305088, 10184792, 817847132765576041, 855545745441971049, 0, 14052248, 140447906200032, 140447901431166, 11334304, 60129542179, 11232592, 11283976, 12447128}}}}, cstacktop = 31, evaldepth = 15, promargs = 0xa5ee98, callfun = 0xa78aa8, sysparent = 0xbded98, call = 0xcbd278, cloenv = 0xa5e7b8, conexit = 0x974688, cend = 0, cenddata = 0x974688, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #83 0x00007fbc93486e73 in Rf_eval (e=0xcbd278, rho=0xbded98) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xa5ee98 depthsave = 14 evalcount = 152 #84 0x00007fbc934872bf in forcePromise (e=0xbdee08) at eval.c:332 prstack = {promise = 0xbdee08, next = 0x7fff9bb0d2f0} val = <value optimized out> #85 0x00007fbc93486d1d in Rf_eval (e=0xbdee08, rho=0xbded98) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 13 evalcount = 152 #86 0x00007fbc93487103 in Rf_eval (e=0xcbd208, rho=0xbded98) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0xbdee08 depthsave = 12 evalcount = 152 #87 0x00007fbc934872bf in forcePromise (e=0xa7b500) at eval.c:332 prstack = {promise = 0xa7b500, next = 0x0} val = <value optimized out> #88 0x00007fbc93486d1d in Rf_eval (e=0xa7b500, rho=0xa7aa88) at eval.c:442 op = <value optimized out> tmp = (SEXP) 0x974650 depthsave = 11 evalcount = 152 #89 0x00007fbc93487103 in Rf_eval (e=0x9dc068, rho=0xa7aa88) at eval.c:430 op = <value optimized out> tmp = (SEXP) 0xa7b500 depthsave = 10 evalcount = 152 #90 0x00007fbc9348820d in Rf_evalList (el=0xc3a828, rho=0xa7aa88, op=0x9a3a50) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa78d98 n = 1 #91 0x00007fbc93487046 in Rf_eval (e=0xc3a860, rho=0xa7aa88) at eval.c:480 save = 24 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0xa7d240, callflag = -1823963554, cjmpbuf = {{__jmpbuf = {11152224, 10047392, 11308328, 140735805446536, 140447903081565, 10039736, 11981872, 4294967296}, __mask_was_saved = -1819346464, __saved_mask = { __val = {140447901575999, 11309112, 140447906200080, 11308552, 10184792, 817847133174520681, 41174063977, 140733193388032, 1, 11307320, 140447901011367, 10215960, 140447902551466, 140735805446288, 1, 9913992}}}}, cstacktop = -1824513432, evaldepth = 32700, promargs = 0x0, callfun = 0x0, sysparent = 0x2000, call = 0x973ff8, cloenv = 0xa7c528, conexit = 0xc87048, cend = 0xffffffff, cenddata = 0xb6d430, vmax = 0xc87048, intsusp = -1824562375, handlerstack = 0x58, restartstack = 0x1, prstack = 0xa7c528, nodestack = 0xb6d430} op = (SEXP) 0x9a3a50 tmp = <value optimized out> depthsave = 9 evalcount = 152 #92 0x00007fbc9348820d in Rf_evalList (el=0xc3a898, rho=0xa7aa88, op=0x994fa0) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa79b08 n = 1 #93 0x00007fbc93487046 in Rf_eval (e=0xc3a8d0, rho=0xa7aa88) at eval.c:480 save = 22 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x7fbc938efb78, callflag = 0, cjmpbuf = {{__jmpbuf = {19, 0, 9913936, 140447901576477, 0, 0, 22, 11250536}, __mask_was_saved = 11250536, __saved_mask = {__val = {34381806840, 22068528, 140447902328700, 140447906189152, 13317832, 10047896, 11258520, 9913992, 9913992, 9913992, 9913992, 9913992, 34359738390, 11301064, 11629808, 12447128}}}}, cstacktop = 13126976, evaldepth = 0, promargs = 0xac6390, callfun = 0x974688, sysparent = 0x0, call = 0x974688, cloenv = 0xc86fe8, conexit = 0x14820b0, cend = 0xc86fe8, cenddata = 0xca7a48, vmax = 0x974688, intsusp = -1819346416, handlerstack = 0xcbd160, restartstack = 0xb6d468, prstack = 0x974688, nodestack = 0x7fbc934b40f8} op = (SEXP) 0x994fa0 tmp = <value optimized out> depthsave = 8 evalcount = 152 #94 0x00007fbc93489f24 in do_if (call=0xc3a940, op=<value optimized out>, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:960 Cond = <value optimized out> #95 0x00007fbc93486f24 in Rf_eval (e=0xc3a940, rho=0xa7aa88) at eval.c:461 save = 20 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 7 evalcount = 152 #96 0x00007fbc934893fc in do_begin (call=0xc3a9b0, op=0x993420, args=0xc3a978, rho=0xa7aa88) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #97 0x00007fbc93486f24 in Rf_eval (e=0xc3a9b0, rho=0xa7aa88) at eval.c:461 save = 18 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 6 evalcount = 152 #98 0x00007fbc9348aaab in Rf_applyClosure (call=0xc52688, op=0xc3ac50, arglist=0xa7b308, rho=0xbded98, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xc3a9b0 formals = (SEXP) 0xa7a890 actuals = (SEXP) 0xa7a890 savedrho = <value optimized out> newrho = (volatile SEXP) 0xa7aa88 f = (SEXP) 0xa7a890 a = (SEXP) 0xa7a890 tmp = (SEXP) 0x7fff9bb0dfc0 cntxt = {nextcontext = 0x7fff9bb0ec10, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805448128, -817784259139839127, 10987664, 140447906200080, 10990344, 10184792, 817847133436664681, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140735805448320, 13135896, 13135896, 11287144, 11287144, 13135896, 140447901592175, 11399192, 0, 12447128, 11399192, 13119664, 11398968, 140735805451280, 140445430579212, 140735805448320}}}}, cstacktop = 17, evaldepth = 6, promargs = 0xa7b308, callfun = 0xc3ac50, sysparent = 0xbded98, call = 0xc52688, cloenv = 0xa7aa88, conexit = 0x974688, cend = 0, cenddata = 0x7fbc934e0d98, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x0, nodestack = 0x9746d0} #99 0x00007fbc93486e73 in Rf_eval (e=0xc52688, rho=0xbded98) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xa7b308 depthsave = 5 evalcount = 152 #100 0x00007fbc9348820d in Rf_evalList (el=0xc52650, rho=0xbded98, op=0x995878) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa7bcf8 n = 1 #101 0x00007fbc93487046 in Rf_eval (e=0xc52618, rho=0xbded98) at eval.c:480 save = 12 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x974650, callflag = -1823970019, cjmpbuf = {{__jmpbuf = {0, 140447905541856, 13119496, 12447128, 0, 19650866599, 12, 0}, __mask_was_saved = -1682904048, __saved_mask = {__val = {140447905541856, 140447906200440, 17699986281, 4294967308, 0, 11300168, 10184792, 817847131507284841, 855545745441971049, 0, 11681872, 4294967293, 140447902523318, 42949672960, 786432, 4308339656}}}}, cstacktop = -1746852332, evaldepth = 766832851, promargs = 0x7fbc938efbd0, callfun = 0x1, sysparent = 0x1, call = 0x1, cloenv = 0xc87168, conexit = 0x0, cend = 0x1, cenddata = 0x7fbc934af564, vmax = 0xc88910, intsusp = -1819346464, handlerstack = 0xd938ef9e0, restartstack = 0x9950f0, prstack = 0xc83430, nodestack = 0x974688} op = (SEXP) 0x995878 tmp = <value optimized out> depthsave = 4 evalcount = 152 #102 0x00007fbc9348820d in Rf_evalList (el=0xc525e0, rho=0xbded98, op=0x995390) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa7bb70 n = 1 #103 0x00007fbc93487046 in Rf_eval (e=0xc525a8, rho=0xbded98) at eval.c:480 save = 10 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x7fbc938efb78, callflag = 9, cjmpbuf = {{__jmpbuf = {8589934602, 0, 211228896818, 9913544, 3293522019091555860, 2, 13353720, 2}, __mask_was_saved = -1682904928, __saved_mask = {__val = {2, 2, 140447902417977, 8589934592, 0, 2548114964, 1, 2, 3293522019091555860, 2, 13435792, 3293522019091555860, 6, 13353664, 6, 140735805450400}}}}, cstacktop = 6, evaldepth = 0, promargs = 0x6, callfun = 0x7fbc93554439, sysparent = 0x7fff00000000, call = 0x7fbc00000000, cloenv = 0x9bb0e7f0, conexit = 0x13b93486de3, cend = 0x2580, cenddata = 0x428, vmax = 0x7fbc933a2a00, intsusp = 128, handlerstack = 0x2db4f0d397e12614, restartstack = 0x403, prstack = 0xac52f0, nodestack = 0xbded98} op = (SEXP) 0x995390 tmp = <value optimized out> depthsave = 3 evalcount = 152 #104 0x00007fbc93489370 in do_set (call=0xc53388, op=0x993618, args=0xc533c0, rho=0xbded98) at eval.c:1446 s = <value optimized out> #105 0x00007fbc93486f24 in Rf_eval (e=0xc53388, rho=0xbded98) at eval.c:461 save = 8 flag = 1 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 2 evalcount = 152 #106 0x00007fbc934893fc in do_begin (call=0xcbc2c0, op=0x993420, args=0xc53350, rho=0xbded98) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #107 0x00007fbc93486f24 in Rf_eval (e=0xcbc2c0, rho=0xbded98) at eval.c:461 save = 6 flag = 2 vmax = (void *) 0x0 op = <value optimized out> tmp = <value optimized out> depthsave = 1 evalcount = 152 #108 0x00007fbc9348aaab in Rf_applyClosure (call=0xcbfc10, op=0xcbfdd0, arglist=0xbdfd78, rho=0x9b6820, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xcbc2c0 formals = (SEXP) 0xbded60 actuals = (SEXP) 0xbded60 savedrho = <value optimized out> newrho = (volatile SEXP) 0xbded98 f = (SEXP) 0xbded60 a = (SEXP) 0xbded60 tmp = (SEXP) 0x7fff9bb0ec10 cntxt = {nextcontext = 0x7fbc938efa20, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805451280, -817784072210195607, 12447072, 140447906200080, 12451192, 10184792, 817847131706514281, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {0, 0, 0, 0, 0, 0, 0, 9913992, 9913992, 13802832, 140447901484316, 1, 14, 875920184165, 9, 20441808}}}}, cstacktop = 5, evaldepth = 1, promargs = 0xbdfd78, callfun = 0xcbfdd0, sysparent = 0x9b6820, call = 0xcbfc10, cloenv = 0xbded98, conexit = 0x974688, cend = 0, cenddata = 0x7fbc933b6d24, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x0, nodestack = 0x9746d0} #109 0x00007fbc93486e73 in Rf_eval (e=0xcbfc10, rho=0x9b6820) at eval.c:505 op = <value optimized out> tmp = (SEXP) 0xbdfd78 depthsave = 0 evalcount = 152 #110 0x00007fbc934b2c9b in Rf_ReplIteration (rho=0x9b6820, savestack=<value optimized out>, browselevel=0, state=0x7fff9bb0efc0) at main.c:257 c = 10 browsevalue = <value optimized out> value = <value optimized out> wasDisplayed = <value optimized out> #111 0x00007fbc934b2f08 in R_ReplConsole (rho=0x9b6820, savestack=0, browselevel=0) at main.c:306 status = <value optimized out> state = {status = PARSE_OK, prompt_type = 1, browselevel = 0, buf = "install.packages ( \"spgrass6\" , dependencies = TRUE )\n", '\0' <repeats 4042 times>, bufp = 0x7fff9bb0f002 ""} #112 0x00007fbc934b2fa0 in run_Rmainloop () at main.c:966 No locals. #113 0x000000000040098b in main (ac=<value optimized out>, av=<value optimized out>) at Rmain.c:33 No locals. #114 0x00007fbc930535a6 in __libc_start_main (main=0x400970 <main>, argc=1, ubp_av=0x7fff9bb100f8, init=0x4009b0 <__libc_csu_init>, fini=<value optimized out>, rtld_fini=<value optimized out>, stack_end=0x7fff9bb100e8) at libc-start.c:220 result = <value optimized out> unwind_buf = {cancel_jmp_buf = {{jmp_buf = {4196784, -817785121637639319, 4196432, 140735805456624, 0, 0, 817847130303519593, 855546256858176361}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x1, 0x400970}, data = { prev = 0x0, cleanup = 0x0, canceltype = 1}}} not_first_call = <value optimized out> #115 0x0000000000400879 in _start () at ../sysdeps/x86_64/elf/start.S:113 No locals. --%<-----%<-----%<-----%<-----%<-----%<-----%<--- _______________________________________________ grass-stats mailing list [hidden email] http://lists.osgeo.org/mailman/listinfo/grass-stats |
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Nikos Alexandris
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Nikos Alexandris wrote: > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > > compile? -- code is below). ( I post this on purpose separately ) --%<--- (gdb) l 31 Rmain.c: No such file or directory. in Rmain.c (gdb) frame 2 #2 0x00007fbc93902dbb in _dl_open (file=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode=-2147483646, caller_dlopen=0x7fbc933df92b, nsid=-2, argc=1, argv=0x7fff9bb100f8, env=0x96fd60) at dl-open.c:596 596 dl-open.c: No such file or directory. in dl-open.c (gdb) l 591 in dl-open.c --%<--- _______________________________________________ grass-stats mailing list [hidden email] http://lists.osgeo.org/mailman/listinfo/grass-stats |
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Nikos Alexandris
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On Tue, 2009-07-28 at 04:08 +0200, Nikos Alexandris wrote:
> Nikos Alexandris wrote: > > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > > > compile? -- code is below). My R 2.9.1 was an installation of all debs that are available at "R binaries" for Ubuntu [1]. Finally I got a tarball [2] and compiled from source. It worked. Seems that the debs miss some files (perhaps Rmain.c ?). Regards, Nikos --- [1] http://cran.r-project.org/bin/linux/ubuntu/jaunty/ [2] http://cran.r-project.org/src/base/R-2/R-2.9.1.tar.gz _______________________________________________ grass-stats mailing list [hidden email] http://lists.osgeo.org/mailman/listinfo/grass-stats |
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